- Ibarra, J.T., J. Caviedes & C. Marchant. 2022. Sustainability for Chile's mountains - a united approach. Nature 605: 620.
- Soares†, L. K.L. Cockle†, E. Ruelas Inzunza†, J.T. Ibarra†, C.Isabel Miño†, S. Zuluaga†, E. Bonaccorso†, J.C. Ríos-Orjuela†, F.A. Montaño-Centellas†, J.F. Freile, M.A. Echeverry-Galvis, E.B. Bonaparte, L.M. Diele-Viegas, K. Speciale, S.A. Cabrera-Cruz, O. Acevedo-Charry, E. Velarde, Cecilia Cuatianquiz et al. 2022. Neotropical ornithology: reckoning with historical assumptions, removing systemic barriers, and reimagining the future. Ornithological Applications. † These authors contributed equally.
- Olivares, F., C. Marchant & J.T. Ibarra. 2022. "The climate itself must have hidden some medicines": traditional veterinary medicine of indigenous and non-indigenous campesinos of the southern Andes. Journal of Ethnobiology and Ethnomedicine 18: 36.
- Berasaluce, M., P. Díaz-Siefer, P. Rodríguez-Díaz, M. Mena-Carrasco, J.T. Ibarra, J.L. Celis-Diez & P. Mondaca. 2021. Social-environmental conflicts in Chile: is there any potential for an ecological constitution? Sustainability 13(22): 12701. Special Issue on Environmental Justice and Sustainability.
- Araneda, P., O. Ohrens & J.T. Ibarra. 2021. Socioeconomic development and life-history traits as predictors of human-bird conflicts. Conservation Biology 36(1): e13859.
- Ibarra, J.T., J. Caviedes, T.A. Altamirano, R. Urra, A. Barreau & F. Santana. 2021. Social-ecological filters drive the functional diversity of beetles in homegardens of campesinos and migrants in the southern Andes. Scientific Reports 11: 12462.
- Benavides, P. & J.T. Ibarra. 2021. Uncanny creatures of the dark: exploring the role of owls across human societies. Anthropos 116: 179-192.
- Almuna, R., J.M. Cruz, F.H. Vargas & J.T. Ibarra. 2020. Landscapes of coexistence: generating predictive risk models to mitigate human-raptor conflicts in forest socio-ecosystems. Biological Conservation 251: 108795.
- Marchant, C., N. Fuentes, S. Kaulen & J.T. Ibarra. 2020. Saberes locales en huertas de montaña del sur de los Andes: un refugio de memoria biocultural mapuche-pewenche. Pirineos 175: e060.
- Ibarra, J.T., K.L. Cockle, T.A. Altamirano, Y. van der Hoek, S. Simard, C. Bonacic & K. Martin. 2020. Nurturing resilient forest biodiversity: nest webs as complex adaptive systems. Ecology and Society 25(2): 27.
- Ibarra, J.T., J. Caviedes & P. Benavides. 2020. Winged voices: Mapuche ornithology from South American temperate forests. Journal of Ethnobiology 40(1): 89-100.
- Jacques-Coper, A., G. Cubillos & J.T. Ibarra. 2019. The Andean Condor as bird, authority, and devil: an empirical assessment of the biocultural keystone species concept in the high Andes of Chile. Ecology and Society 24(2): 35.
- Bonacic, C., R. Almuna & J.T. Ibarra. 2019. Biodiversity conservation requires management of feral domestic animals. Trends in Ecology and Evolution 34(8): 683-686.
Libros y capítulos de libros:
- Ibarra, J.T., P. Ayelef, F. Santana & M. Lara. 2021. Semillas viajeras, semillas libres – Nampülkafe lleküm, auka lleküm. Orjikh Ediciones. ISBN: 978-956-9058-43-1.
- Ibarra, J.T., J. Caviedes, A. Barreau & N. Pessa (Eds). 2019. Huertas familiares y comunitarias: cultivando soberanía alimentaria. Ediciones Universidad Católica de Chile, Santiago, Chile. 228 pp. ISBN: 978-956-14-2331-2.
- Ibarra, J.T. 2016. Owls as ecological and conservation tools in the southern Andes. LAP Lambert Academic Publishing, Saarbrücken, Deutschland (Germany). 84 pp. ISBN: 978-3-659-95887-8.
- Altamirano, T.A., J.T. Ibarra, F. Hernández, I. Rojas, J. Laker & C. Bonacic. 2012. Hábitos de nidificación de las aves del bosque templado andino de Chile. Fondo de Protección Ambiental, Ministerio del Medio Ambiente, Serie Fauna Australis, Pontificia Universidad Católica de Chile. Santiago, Chile. 113 pp. ISBN: 978-956-345-582-3.
- Bonacic, C., & J.T. Ibarra. 2010. Fauna Andina: historia natural y conservación. Serie Fauna Australis, Facultad de Agronomía e Ingeniería Forestal, Pontificia Universidad Católica de Chile. División Andina, CODELCO. Santiago, Chile. 192 pp. ISBN: 978-956-319-940-6.
- Ibarra, J.T., R. Petitpas, A. Barreau, J. Caviedes, J. Cortés, G. Orrego, G. Salazar & T.A. Altamirano. 2022. Becoming tree, becoming memory: social-ecological fabrics in Pewen (Araucaria araucaria) landscapes of the southern Andes. Ch. 2. In Wall, J. (Ed.) The cultural value of trees: folk value and biocultural conservation. Routledge, Abingdon, UK. pp 15-31.
- Bascopé, M., J. Caviedes,, R. Becerra, N. Gálvez, M. Marques, G. Salazar, A. Barreau & J.T. Ibarra. 2021. Socioecología basada en la comunidad: investigación científica escolar y formación ciudadana para la sustentabilidad en Wallmapu. En Villalobos, C., M.J. Morel & E. Treviño (Eds.) Ciudadanías, educación y juventudes. Investigaciones y debates para el Chile del futuro. Ediciones Universidad Católica de Chile, Santiago, Chile. pp 489-522.
- Ibarra, J.T., A. Barreau, J. Caviedes, N. Pessa, J. Valenzuela, S. Navarro-Manquilef, C. Monterrubio-Solís, A. Ried & J.C. Pizarro. 2020. Listening to elders: birds and forests as intergenerational links for nurturing biocultural memory in the southern Andes. Ch. 13. In Derr, V. & Y. Corona (Eds.) Transnational children and youth: experiences of nature and place, culture and care across the Americas. Routledge, Abingdon, UK. pp 160-175.
- Ibarra, J.T., A. Barreau, C. Marchant, J.A. González, M. Oliva, M.E. Donoso-Correa, B. Antaki, C. Monterrubio-Solís & F.O. Sarmiento. 2020. Montology: an integrative understanding of mountain foodscapes for strengthening food sovereignty in the Andes. Ch. 24. In Sarmiento, F.O. & L. Frolich (Eds.) The Elgar companion to geography, transdisciplinarity and sustainability. Edward Elgar Publishing, Cheltenham, UK. pp 391-405.